PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g13590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 458aa    MW: 50781.8 Da    PI: 6.0652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g13590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.98.3e-14122145326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 e C+f++rtGtCk+G++CkF+H+
  Tp5g13590 122 AEDCSFYMRTGTCKFGSTCKFNHP 145
                689********************9 PP

2zf-CCCH29.81e-09175194625
                -SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                C++++rtG CkyG++C+F+H
  Tp5g13590 175 CKYYFRTGGCKYGETCRFNH 194
                ******************** PP

3zf-CCCH382.7e-12218241326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                + +C++++r+G Ck+G+ CkF H+
  Tp5g13590 218 EIECPYYMRNGSCKFGADCKFDHP 241
                568********************9 PP

4zf-CCCH201.2e-06358383227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG Ck+  +Ck++H++
  Tp5g13590 358 DQPECSYYLKTGDCKFKFSCKYHHPK 383
                689*********************96 PP

5zf-CCCH33.76.2e-11405428326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                + +C +++r+G+Ck+G+ C+F H+
  Tp5g13590 405 QNICTHYSRYGICKFGPACRFDHS 428
                679********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-7119146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629119147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6121148IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-11122145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5125144IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-4169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676169197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6171197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5175195IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7175194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525215243IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6215242IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-10218241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5219242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4221240IPR000571Zinc finger, CCCH-type
SMARTSM003560.41356383IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056356384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6400428IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4402429IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765402430IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8405428IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4407429IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MINSEEGVSI SISDGFEPKR VSRSSSCDSF ADRSPSDLNH AADELSDHLK NVGLDEVAKA  60
KSEKMMSVFE SNGAVDSKAV DGNQEKEEEE GRDGDGDDGG SESENENRFE KREASYPVRP  120
GAEDCSFYMR TGTCKFGSTC KFNHPLPNPR KNHIARDNKV REKEEDADNL RLMDCKYYFR  180
TGGCKYGETC RFNHTKPKSG LPAVQELNFL GLPIRPGEIE CPYYMRNGSC KFGADCKFDH  240
PDPTTIGGTD SPSFHGNNGG SIGSYSPKTT FQASSTSWSS PRHANGATPF VPSVLSQSRG  300
VPSQTPEWNG YQASVYSSER SVFSPSTTYL VNNSSTEPSI FSQYQYQMPA EEFPERPDQP  360
ECSYYLKTGD CKFKFSCKYH HPKNRLPKQP SYALNDKGLP LRPDQNICTH YSRYGICKFG  420
PACRFDHSIQ LPYPTGSSHA VVEPPQVGAN GNESDGWN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190414.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGAT3G48440.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein